NaBiT

発表原著論文

量子生命科学プロジェクト研究センター
Center for Quantum Life Sciences (QuLiS)

2003年度業績リスト

○　原著論文

機能設計予測グループ
（メンバー：相田美砂子・榮慶丈）
（博士研究員：Shaheda A. Wahab）

Toshiko Miyake and Misako Aida, “Hydrogen Bonding Patterns in Water Clusters: Trimer, Tetramer and Pentamer,” Internet Electronic Journal of Molecular Design, 2, 24-32 (2003).
http://www.biochempress.com.

S. C. Ammal, Hiroshi Yamataka, Misako Aida and Michel Dupuis, “Dynamics-Driven Reaction Pathway in an Intrameolecular Rearrangement,” Science, 299, 1555-1557 (2003).

Hiroshi Yamataka, Misako Aida and Michel Dupuis, “Ab initio molecular dynamics studies on substitution vs. electron transfer reactions of substituted ketyl radical anions with chloroalkanes: How do the two products form in a borderline mechanism?” Journal of Physical Organic Chemistry, 16, 475-483 (2003).

Misako Aida and Michel Dupuis, “IR and Raman Intensities in Vibrational Spectra from Direct Ab Initio Molecular Dynamics: D₂O as an Illustration,” Journal of Molecular Structure (Theochem), 633, 247-255 (2003).

Keiichi Ohno, S. Matsumoto, Misako Aida and Hiroatsu Matsuura, “Protonation-Induced Conformational Changes of 2-Dimethylaminoethanethiol. Importance of Strong N-H⁺…S and N-H⁺…S^-Hydrogen Bonding,” Chemistry Letters, 32(9), 828-829 (2003).

Yoshitake Sakae and Yuko Okamoto, “Optimization of protein force-field parameters with the Protein Data Bank,” Chemical Physics Letters, 382, 626-636 (2003).

Shaheda A. Wahab, Md. Ruhul Matin and Hiroatsu Matsuura, “Infrared spectroscopic study of conformational properties of a short-chain poly(oxyethylene) (C₁E₃C₁) complexed with lithium halides in water,” Journal of Molecular Structure, 658(1-2), 79-86 (2003).

構造設計予測合成グループ
（メンバー：吉田弘・小島聡志）
（博士研究員：高須雄一）

Hiroshi Yoshida, “MOLDA for Protein Modeling: A Molecular Modeling Program for Biological Molecules,” Journal of Computer Chemistry, Japan, 2(4), 143-148 (2003).

Yuichi Takasu, Katsutoshi Iwai and Izumi Nishio, “Low Frequency Raman Profile of Type II Clathrate Hydrate of THF and Its Application for Phase Identification,” Journal of the Physical Society of Japan, 72(5), 1287-1291(2003).

Yuichi Takasu and Izumi Nishio, “New Analysis of Low Frequency Raman Spectra of THF Aqueous Solution and its Coexisting Phase with Clathrate Hydrate,” Journal of the Physical Society of Japan, 72(8), 2106-2109(2003).

Yuichi Takasu, Yuji Miyashita, Yukiko Kasai and Izumi Nishio, “The Study of Dynamical Structure of Water Molecules in Aqueous Solutions of Acetone and DMSO by Low Frequency Raman Scattering,” Journal of the Physical Society of Japan, 72(10), 2665-2670(2003).

Hiroatsu Matsuura, Hiroshi Yoshida, Munenori Hieda, Shin-ya Yamanaka, Takanori Harada, Kei Shin-ya and Keiichi Ohno, “Experimental Evidence for Intramolecular Blue-Shifting C-H…O Hydrogen Bonding by Matrix-Isolation Infrared Spectroscopy,” Journal of the American Chemical Society, 125(46), 13910-13911 (2003).

Satoshi Kojima, K. Kawaguchi, S. Matsukawa and Kinya Akiba, “Stereospecific stilbene formation from b-hydroxy-a,b-diphenylethylphosphoranes: Mechanistic proposals based upon stereochemistry,” Tetrahedron, 59, 255-265 (2003).

Ryukichi Takagi, Wataru Miyanaga, Yukiko Tamura, Satoshi Kojima and Katsuo Ohkata, “ p-facial selectivity in Diels-Alder reactions of cross-conjugated ketones bearing an oxa-spiro-ring with sterically undemanding dienes,” Heterocycles, 60, 785-790 (2003).

M. Takeda, M. Takahashi, Kinya Akiba and Satoshi Kojima, “The relation between Sb-I bond lengths and charges on iodine atoms determined by ¹²⁷I Mossbauer spectroscopy,” Journal of Radioanalytical and Nuclear Chemistry, 255, 275-278 (2003).

蛋白質情報グループ
（メンバー：井出博・泉俊輔・片柳克夫）

Katsuo Katayanagi, Yasunori Kamiya, JingJie Mao, Y. Hori, Kazutoshi Yamamoto, Fuki Hagiwara and H. Kittaka, “Structure and function of the ETD mutant by the X-ray Crystallography,” Spring-8 user experiment report, 11 (2003A), 341, (2003).

Ryuji Asakawa, Hitoshi Komatsuzawa, Toshihisa Kawai, Sakuo Yamada, Reginaldo Bruno Goncalves, Shunsuke Izumi, Tamaki Fujiwara, Yoshio Nakano, Nao Suzuki, Yuushi Uchida, Kazuhisa Ouhara, Hiroshi Ideki Shiba, Martin A. Taubman, Hiroshi Idemi Kurihara and Motoyuki Sugai, “Outer membrane protein 100, a versatile virulence factor of Actinobacillus actinomycetemcomitans,” Molecular Microbiology, 50(4), 1125-1139 (2003).

Shunsuke Izumi, H. Kaneko, T. Yamazaki, T. Hirata and S. Kominami, “Membrane Topology of Guinea Pig Cytochrome P450 17a Revealed by a Combination of Chemical Modifications and Mass Spectrometry,” Biochemistry, 42(49), 14663-14669 (2003).

M. Matsubara, Aya Masaoka, T. Tanaka, T. Miyano, N. Kato, Hiroaki Terato, Yoshihiko Ohyama, S. Iwai and Hiroshi Ide, “Mammalian 5-formyluracil-DNA glycosylase. 1 Identification and characterization of a novel activity that releases 5-formyluracil from DNA,” Biochemistry, 42, 4993-5002 (2003).

Aya Masaoka, M. Matsubara, R. Hasegawa, T. Tanaka, S. Kuris, Hiroaki Terato, Yoshihiko Ohyama, N. Karino, A. Matsuda and Hiroshi Ide, “Mammalian 5-formyluracil-DNA glycosylase. 2 Role of SMUG1 uracil-DNA glycosylase in repair of 5-formyluracil and other oxidized and deaminated base lesions,” Biochemistry, 42, 5003-5012 (2003).

Toshiaki Nakano, Hiroaki Terato, Kenjiro Asagoshi, Aya Masaoka, Miho Mukuta, Yoshihiko Ohyama, Toshinori Suzuki, Keisuke Makino and Hiroshi Ide, “DNA-protein cross-link formation mediated by oxanine. A novel genotoxic mechanism of nitric oxide-induced DNA damage,” Journal of Biological Chemistry, 278, 25264-25272 (2003).

生体系情報グループ
（メンバー：田中伸和・小澤孝一郎・古武弥一郎・勝本之晶）
（博士研究員：Adchara Padermshoke）
（客員教授：齋藤肇）

Katsuhito Nagano, Etuko Suzaki, Yuko Nagano, Katsuko Kataoka, Michiko Yoshii and Koichiro Ozawa, “Disuse atrophy alterations in normal and low temperature environments during hindlimb unloading in Syrian hamsters,” Cryoletters, 24, 245-252 (2003).

Miya Kamihira, Yuki Oshiro, Satoru Tuzi, Atsuko Y. Nosaka, Hazime Saito and Akira Naito , “Effect of Electrostatic Interaction on Fibril Formation of Human Calcitonin as Studied by High Resolution SolidState ¹³C NMR,” The Journal of Biological Chemistry, 278, 2859-2865 (2003).

Tadashi Arakawa, Kazumi Shimono, Satoru Yamaguchi, Satoru Tuzi, Yuki Sudo, Naoki Kamo and Hazime Saito, “Dynamic Structure of pharaonis Phoborhodopsin (Sensory Rhodopsin II) and Complex with a Cognate Truncated Transducer as Revealed by Site-directed ¹³C Solid-state NMR,” FEBS Letters, 536, 237-240 (2003).

Koka Yonebayashi, Satoru Yamaguchi, Satoru Tuzi and Hazime Saito, “Cytoplasmic Surface Structures of Bacteriorhodopsin Modifed by Site-directed Mutations and Cation-bindings as Revealed by ¹³C NMR,” European Biophysics Journal, 32, 1-11 (2003).

Satoru Tuzi, Akira Naito and Hazime Saito, “Local Protein Structure and Dynamics at Kinked Transmembrane a-Helices of [1-¹³C]Pro-labeled Bacteriorhodopsin as Revealed by Site-directed Solid-state ¹³C NMR,” Journal of Molecular Structure , 654, 205-214 (2003).

Satoru Tuzi, Naoko Uekama, Masashi Okada, Satoru Yamaguchi, Hazime Saito and Hitoshi Yagisawa, “Structure and Dynamics of the Phospholipase C-d1 PH Domain Located at the Lipid Bilayer Surface,” Journal of Biological Chemistry , 278, 28019-28025 (2003).

Patrick Barre, Satoru Yamaguchi, Hazime Saito and Daniel Huster, “Backbone Dynamics of Bacteriorhodopsin as Studied by ¹³C Solid-state NMR Spectroscopy,” European Biophysics Journal, 32, 578-584 (2003).

Hazime Saito, Kazutoshi Yamamoto, Satoru Tuzi and Satoru Yamaguchi, “Backbone Dynamics of Membrane Proteins in Lipid Bilayers: The Effect of Two Dimensional Array Formation as Revealed by Site-directed Solid-state 13C NMR Studies on [3-¹³C]Ala- and [1-¹³C]Val-labeled Bacterorhodopsin,” Biochimica et Biophysica Acta, 1616, 127-136 (2003).

勝本之晶，田中丈幸，尾崎幸洋，「振動分光法で見るアクリルアミド誘導体ポリマーの局所構造と溶媒和」，高分子論文集，60，256-268（2003）.

Yukiteru Katsumoto and Yukihiro Ozaki, “A Practical Algorithm for Reducing Convex Spike Noises on a Spectrum, ” Appl. Spectrosc., 57, 317-322 (2003).

Slobodan Sasic, Yukiteru Katsumoto, Harumi Sato and Yukihiro Ozaki, “Applications of Moving Window Two-Dimensional Correlation Spectroscopy to Analysis of Phase Transitions and Spectra Classification,” Analytical Chemistry, 75, 4010-4018 (2003).

Yaichiro Kotake, Shigeru Ohta, Ichiro Kanazawa and Masaki Sakurai, “Neurotoxicity of an endogenous brain amine, 1-benzyl-1,2,3,4-tetrahydroisoquinoline, in organotypic slice co-culture of mesencephalon and striatum,” Neuroscience, 117, 63-70 (2003).

Katsuhiro Okuda, Yaichiro Kotake and Shigeru Ohta, “Neuroprotective or neurotoxic activity of 1-methyl-1,2,3,4-tetrahydroisoquinoline and related compounds,” Bioorganic and Medicinal Chemistry Letters, 13, 2853-2855 (2003).

Kazuo Yoshida, Misugi Uraji, Yoshiyuki Hattori, Kazuki Moriguchi, Katsunori Suzuki, Nobukazu Tanaka and Akira Kato, “The first complete sequencing analyses of plant tumor-inducing plasmid Ti and root-inducing plasmid Ri indicate their chimeric structures and unique evolutional relationships,” Recent Research and Development of Plant Cell Physiology, 1, 53-61 (2003).

戻る